Python Module Index

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	`gunz_cm`
	`gunz_cm.cli`
	`gunz_cm.cli.converters`
	`gunz_cm.cli.loaders`
	`gunz_cm.cli.main`
	`gunz_cm.consts`
	`gunz_cm.converters`
	`gunz_cm.converters.coo`
	`gunz_cm.converters.gnz`
	`gunz_cm.converters.memmap`
	`gunz_cm.datasets`
	`gunz_cm.datasets.gnz`
	`gunz_cm.datasets.hic`
	`gunz_cm.datasets.memmap`
	`gunz_cm.exceptions`
	`gunz_cm.io`
	`gunz_cm.io.gnz`
	`gunz_cm.loaders`
	`gunz_cm.loaders.cool_loader`
	`gunz_cm.loaders.csv_loader`
	`gunz_cm.loaders.ginteractions_loader`
	`gunz_cm.loaders.hic_loader`
	`gunz_cm.loaders.memmap_loader`
	`gunz_cm.loaders.narrowpeaks`
	`gunz_cm.loaders.pickle_loader`
	`gunz_cm.loaders.utils`
	`gunz_cm.metrics`
	`gunz_cm.metrics.reconstruction`
	`gunz_cm.metrics.reconstruction.n_way_interactions`
	`gunz_cm.metrics.ren`
	`gunz_cm.metrics.ren.hic_spector`
	`gunz_cm.metrics.ren.hicrep`
	`gunz_cm.metrics.ren.stat_test`
	`gunz_cm.metrics.ren.third_parties`
	`gunz_cm.metrics.ren.third_parties.hic_spector`
	`gunz_cm.metrics.ren.third_parties.hic_spector_ahmed`
	`gunz_cm.metrics.ren.third_parties.hic_spector_wrapper`
	`gunz_cm.metrics.ren.third_parties.hicrep`
	`gunz_cm.metrics.ren.third_parties.hicrep.hicrep`
	`gunz_cm.metrics.ren.third_parties.hicrep.utils`
	`gunz_cm.metrics.ren.third_parties.hicrep_wrapper`
	`gunz_cm.pipeline`
	`gunz_cm.pipeline.core`
	`gunz_cm.pipeline.sprite`
	`gunz_cm.pipeline.sprite.downweighting`
	`gunz_cm.pipeline.sprite.sprite_cm`
	`gunz_cm.preprocs`
	`gunz_cm.preprocs.band_matrix`
	`gunz_cm.preprocs.commons`
	`gunz_cm.preprocs.converters`
	`gunz_cm.preprocs.count_filters`
	`gunz_cm.preprocs.graphs`
	`gunz_cm.preprocs.infer_shape`
	`gunz_cm.preprocs.linear_scaler`
	`gunz_cm.preprocs.log_scaler`
	`gunz_cm.preprocs.masks`
	`gunz_cm.preprocs.mirrors`
	`gunz_cm.preprocs.noises`
	`gunz_cm.preprocs.rc_filters`
	`gunz_cm.preprocs.rc_filters_common`
	`gunz_cm.preprocs.resamples`
	`gunz_cm.preprocs.sparse_wish_dist`
	`gunz_cm.preprocs.triu_matrix`
	`gunz_cm.preprocs.weight_filters`
	`gunz_cm.reconstructions`
	`gunz_cm.reconstructions.objectives`
	`gunz_cm.reconstructions.objectives.consts`
	`gunz_cm.reconstructions.objectives.general_error`
	`gunz_cm.reconstructions.objectives.mds`
	`gunz_cm.reconstructions.objectives.procrustes`
	`gunz_cm.reconstructions.preprocs`
	`gunz_cm.reconstructions.preprocs.points`
	`gunz_cm.reconstructions.third_party`
	`gunz_cm.reconstructions.third_party.flamingo`
	`gunz_cm.reconstructions.third_party.h3dg`
	`gunz_cm.reconstructions.third_party.shneigh`
	`gunz_cm.reconstructions.third_party.superrec`
	`gunz_cm.resolution_enhancements`
	`gunz_cm.resolution_enhancements.datasets`
	`gunz_cm.resolution_enhancements.datasets.memmap_v1`
	`gunz_cm.resolution_enhancements.datasets.memmap_v2`
	`gunz_cm.resolution_enhancements.datasets.ren_memmap_v1`
	`gunz_cm.resolution_enhancements.preprocs`
	`gunz_cm.resolution_enhancements.preprocs.downscaling`
	`gunz_cm.resolution_enhancements.preprocs.normalize`
	`gunz_cm.resolution_enhancements.preprocs.thresholding`
	`gunz_cm.resolution_enhancements.transforms`
	`gunz_cm.resolution_enhancements.transforms.cp_input_as_output`
	`gunz_cm.resolution_enhancements.transforms.rand_downsample`
	`gunz_cm.samplers`
	`gunz_cm.samplers.spatial`
	`gunz_cm.structs`
	`gunz_cm.utils`
	`gunz_cm.utils.intervals`
	`gunz_cm.utils.logger`
	`gunz_cm.utils.matrix`
	`gunz_cm.utils.path`
	`gunz_cm.utils.resources`
	`gunz_cm.utils.stream`