Hide navigation sidebar

Hide table of contents sidebar

Toggle site navigation sidebar

gunz-cm 2.28.1 documentation

Toggle table of contents sidebar

gunz-cm 2.28.1 documentation

The Gunz Ecosystem

Gunz-ML (SDK)
Gunz-CM (Matrix)
Gunz-Utils (Core)

Getting Started

Getting Started with Gunz-CM
Installation
Quickstart
Core Concepts

User Guide

User Guide

Technical Reference

GZCM Format
gunz_cm
Toggle child pages in navigation
- gunz_cm package
  Toggle child pages in navigation
  - gunz_cm.cli
  - gunz_cm.compressions
    Toggle child pages in navigation
  - gunz_cm.converters
  - gunz_cm.datasets
  - gunz_cm.io
  - gunz_cm.loaders
  - gunz_cm.metrics package
    Toggle child pages in navigation
    - gunz_cm.metrics.reconstruction
    - gunz_cm.metrics.ren package
      Toggle child pages in navigation
      - gunz_cm.metrics.ren.wrappers
  - gunz_cm.pipeline
  - gunz_cm.preprocs package
    Toggle child pages in navigation
  - gunz_cm.reconstructions package
    Toggle child pages in navigation
  - gunz_cm.resolution_enhancements package
    Toggle child pages in navigation
  - gunz_cm.samplers
  - gunz_cm.structs package
  - gunz_cm.utils
  - gunz_cm.visualizations
Tutorials
Toggle child pages in navigation

Tutorials

Tutorials
Toggle child pages in navigation
Tutorial: Load HIC contact matrix data
Tutorial: Load COOL / MCOOL contact matrix data
Tutorial: Convert contact matrices to alternate formats
Tutorial: Visualizing Hi-C contact matrices with gunz_cm.visualizations
Tutorial: Filter and balance a contact matrix
Tutorial: KR and ICE balancing for Hi-C contact matrices
Tutorial: Downsample a Hi-C contact matrix to a coarser resolution

Project Info

Changelog

Migration Guides

GZCM v3 → v4 migration guide

Toggle table of contents sidebar

gunz_cm.resolution_enhancements.datasets#

Module contents#

gunz_cm.resolution_enhancements.preprocs

gunz_cm.resolution_enhancements package

Copyright © 2024-2026, Yeremia Gunawan Adhisantoso

Made with Sphinx and @pradyunsg's Furo

On this page

gunz_cm.resolution_enhancements.datasets
- Module contents