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gunz-cm 2.28.1 documentation

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gunz-cm 2.28.1 documentation

The Gunz Ecosystem

Gunz-ML (SDK)
Gunz-CM (Matrix)
Gunz-Utils (Core)

Getting Started

Getting Started with Gunz-CM
Installation
Quickstart
Core Concepts

User Guide

User Guide

Technical Reference

GZCM Format
gunz_cm
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- gunz_cm package
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  - gunz_cm.cli
  - gunz_cm.compressions
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  - gunz_cm.converters
  - gunz_cm.datasets
  - gunz_cm.io
  - gunz_cm.loaders
  - gunz_cm.metrics package
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    - gunz_cm.metrics.reconstruction
    - gunz_cm.metrics.ren package
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      - gunz_cm.metrics.ren.wrappers
  - gunz_cm.pipeline
  - gunz_cm.preprocs package
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  - gunz_cm.reconstructions package
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  - gunz_cm.resolution_enhancements package
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  - gunz_cm.samplers
  - gunz_cm.structs package
  - gunz_cm.utils
  - gunz_cm.visualizations
Tutorials
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Tutorials

Tutorials
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Tutorial: Load HIC contact matrix data
Tutorial: Load COOL / MCOOL contact matrix data
Tutorial: Convert contact matrices to alternate formats
Tutorial: Visualizing Hi-C contact matrices with gunz_cm.visualizations
Tutorial: Filter and balance a contact matrix
Tutorial: KR and ICE balancing for Hi-C contact matrices
Tutorial: Downsample a Hi-C contact matrix to a coarser resolution

Project Info

Changelog

Migration Guides

GZCM v3 → v4 migration guide

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gunz_cm.resolution_enhancements.preprocs#

Module contents#

gunz_cm.resolution_enhancements.transforms

gunz_cm.resolution_enhancements.datasets

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gunz_cm.resolution_enhancements.preprocs
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