gunz_cm.reconstructions.third_party package
Submodules
gunz_cm.reconstructions.third_party.flamingo module
Module.
Examples
- gunz_cm.reconstructions.third_party.flamingo.comp_flamingo_obj_perf(region1: str, resolution: int, balancing: str, input_fpath: str, points_fpath: str, region2: str | None = None) dict[source]
Computes the performance metrics (Spearman and Pearson correlation) for Euclidean distances predicted by FLAMINGO.
The function loads contact map data and point coordinates, filters out invalid data, and computes the Euclidean distance matrix.
If region2 is not provided, the function assumes the same region for both comparisons.
The function raises a FileNotFoundError if the points file does not exist.
- region1str
The first genomic region to analyze.
- resolutionint
The resolution of the genomic data.
- balancingstr
The balancing method to use for the contact map data.
- input_fpathstr
The file path to the input contact map data.
- points_fpathstr
The file path to the points data.
- region2t.Optional[str], optional
The second genomic region to analyze, by default None.
- dict
A dictionary containing the region, Spearman correlation, Pearson correlation, and the ratio of valid data.
Yeremia G. Adhisantoso (adhisant@tnt.uni-hannover.de)
Qwen2.5 72B - 4.25bpw
Examples