All modules for which code is available
- gunz_cm.cli.converters
- gunz_cm.cli.loaders
- gunz_cm.cli.main
- gunz_cm.consts
- gunz_cm.converters.coo
- gunz_cm.converters.gnz
- gunz_cm.converters.memmap
- gunz_cm.datasets.gnz
- gunz_cm.datasets.hic
- gunz_cm.datasets.memmap
- gunz_cm.exceptions
- gunz_cm.io.gnz
- gunz_cm.loaders
- gunz_cm.loaders.cool_loader
- gunz_cm.loaders.csv_loader
- gunz_cm.loaders.ginteractions_loader
- gunz_cm.loaders.hic_loader
- gunz_cm.loaders.memmap_loader
- gunz_cm.loaders.narrowpeaks
- gunz_cm.loaders.pickle_loader
- gunz_cm.loaders.utils
- gunz_cm.metrics.reconstruction.n_way_interactions
- gunz_cm.metrics.ren.hic_spector
- gunz_cm.metrics.ren.hicrep
- gunz_cm.metrics.ren.third_parties.hic_spector
- gunz_cm.metrics.ren.third_parties.hic_spector_ahmed
- gunz_cm.metrics.ren.third_parties.hic_spector_wrapper
- gunz_cm.metrics.ren.third_parties.hicrep
- gunz_cm.metrics.ren.third_parties.hicrep_wrapper
- gunz_cm.pipeline.core
- gunz_cm.pipeline.sprite.downweighting
- gunz_cm.pipeline.sprite.sprite_cm
- gunz_cm.preprocs.band_matrix
- gunz_cm.preprocs.converters
- gunz_cm.preprocs.count_filters
- gunz_cm.preprocs.graphs
- gunz_cm.preprocs.infer_shape
- gunz_cm.preprocs.linear_scaler
- gunz_cm.preprocs.log_scaler
- gunz_cm.preprocs.masks
- gunz_cm.preprocs.mirrors
- gunz_cm.preprocs.noises
- gunz_cm.preprocs.rc_filters
- gunz_cm.preprocs.rc_filters_common
- gunz_cm.preprocs.resamples
- gunz_cm.preprocs.sparse_wish_dist
- gunz_cm.preprocs.triu_matrix
- gunz_cm.preprocs.weight_filters
- gunz_cm.reconstructions.objectives.general_error
- gunz_cm.reconstructions.objectives.mds
- gunz_cm.reconstructions.objectives.procrustes
- gunz_cm.reconstructions.preprocs.points
- gunz_cm.reconstructions.third_party.flamingo
- gunz_cm.reconstructions.third_party.h3dg
- gunz_cm.reconstructions.third_party.shneigh
- gunz_cm.reconstructions.third_party.superrec
- gunz_cm.resolution_enhancements.datasets.memmap_v1
- gunz_cm.resolution_enhancements.datasets.memmap_v2
- gunz_cm.resolution_enhancements.datasets.ren_memmap_v1
- gunz_cm.resolution_enhancements.preprocs.downscaling
- gunz_cm.resolution_enhancements.preprocs.normalize
- gunz_cm.resolution_enhancements.preprocs.thresholding
- gunz_cm.resolution_enhancements.transforms.cp_input_as_output
- gunz_cm.resolution_enhancements.transforms.rand_downsample
- gunz_cm.samplers.spatial
- gunz_cm.utils.intervals
- gunz_cm.utils.logger
- gunz_cm.utils.path
- gunz_cm.utils.resources
- gunz_cm.utils.stream